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Experimental metatranscriptomics reveals the costs and benefits of dissolved organic matter photo-alteration for freshwater microbes.

Oregon State University, Corvallis, OR, USA. College of Earth, Ocean, and Atmospheric Sciences, Oregon State University, Corvallis, OR, USA. Woods Hole Oceanographic Institution, Falmouth, MA, USA. College of Literature, Science, and the Arts Earth and Environmental Sciences, University of Michigan, Ann Arbor, MI, USA. University of Michigan, Ann Arbor, MI, USA. College of Literature, Science, and the Arts Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI, USA. Department of Microbiology, Oregon State University, Corvallis, OR, USA. Center for Genome Research and Biocomputing, Oregon State University, Corvallis, OR, USA.

Environmental microbiology. 2020;(8):3505-3521
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Abstract

Microbes and sunlight convert terrigenous dissolved organic matter (DOM) in surface waters to greenhouse gases. Prior studies show contrasting results about how biological and photochemical processes interact to contribute to the degradation of DOM. In this study, DOM leached from the organic layer of tundra soil was exposed to natural sunlight or kept in the dark, incubated in the dark with the natural microbial community, and analysed for gene expression and DOM chemical composition. Microbial gene expression (metatranscriptomics) in light and dark treatments diverged substantially after 4 h. Gene expression suggested that sunlight exposure of DOM initially stimulated microbial growth by (i) replacing the function of enzymes that degrade higher molecular weight DOM such as enzymes for aromatic carbon degradation, oxygenation, and decarboxylation, and (ii) releasing low molecular weight compounds and inorganic nutrients from DOM. However, growth stimulation following sunlight exposure of DOM came at a cost. Sunlight depleted the pool of aromatic compounds that supported microbial growth in the dark treatment, ultimately causing slower growth in the light treatment over 5 days. These first measurements of microbial metatranscriptomic responses to photo-alteration of DOM provide a mechanistic explanation for how sunlight exposure of terrigenous DOM alters microbial processing and respiration of DOM.